4 September 2023
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Implications of Translesion DNA Synthesis Polymerases on Genomic Stability and Human Health
Jegadheeswari Venkadakrishnan, Ganesh Lahane, Arti Dhar, Wei Xiao, Krishna Moorthi Bhat, Tej K. PanditaORCID Icon & Audesh Bhat
Mol Cell Biol 43 Pages 401-425
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NFIB facilitates replication licensing by acting as a genome organizer
Wenting Zhang, Yue Wang, Yongjie Liu, Cuifang Liu, Yizhou Wang, Lin He, Xiao Cheng, Yani Peng, Lu Xia, Xiaodi Wu, Jiajing Wu, Yu Zhang, Luyang Sun, Ping Chen, Guohong Li, Qiang Tu, Jing Liang & Yongfeng Shang
Nature Communications volume 14, Article number: 5076 (2023)
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How Pol α-primase is targeted to replisomes to prime eukaryotic DNA replication
Morgan L. Jones, Valentina Aria, Yasemin Baris, Joseph T.P. Yeeles
Mol Cell VOLUME 83, ISSUE 16, P2911-2924.E16
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Dimeric G-quadruplex motifs-induced NFRs determine strong replication origins in vertebrates
Jérémy Poulet-Benedetti, Caroline Tonnerre-Doncarli, Anne-Laure Valton, Marc Laurent, Marie Gérard, Natalja Barinova, Nikolaos Parisis, Florian Massip, Franck Picard & Marie-Noëlle Prioleau
Nature Communications volume 14, Article number: 4843 (2023)
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Regulation of Rad52-dependent replication fork recovery through serine ADP-ribosylation of PolD3
Frederick Richards, Marta J. Llorca-Cardenosa, Jamie Langton, Sara C. Buch-Larsen, Noor F. Shamkhi, Abhishek Bharadwaj Sharma, Michael L. Nielsen & Nicholas D. Lakin
Nature Communications volume 14, Article number: 4310 (2023)
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ORC1 binds to cis-transcribed RNAs for efficient activation of replication origins
Aina Maria Mas, Enrique Goñi, Igor Ruiz de los Mozos, Aida Arcas, Luisa Statello, Jovanna González, Lorea Blázquez, Wei Ting Chelsea Lee, Dipika Gupta, Álvaro Sejas, Shoko Hoshina, Alexandros Armaos, Gian Gaetano Tartaglia, Shou Waga, Jernej Ule, Eli Rothenberg, María Gómez & Maite Huarte
Nature Communications volume 14, Article number: 4447 (2023)
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CST–Polα/Primase: the second telomere maintenance machine
Sarah W Cai and Titia de Lange
Genes and Dev. 37:1–15
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Changing protein–DNA interactions promote ORC binding-site exchange during replication origin licensing
Annie Zhang, Larry J. Friedman, Jeff Gelles, and Stephen P. Bell
PNAS 120 (30) e2305556120
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Regulation of replication origin licensing by ORC phosphorylation reveals a two-step mechanism for Mcm2-7 ring closing
Audra L. Amasino, Shalini Gupta, Larry J. Friedman, Jeff Gelles, and Stephen P. Bell
PNAS 120 (29) e2221484120
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Firing of Replication Origins Is Disturbed by a CDK4/6 Inhibitor in a pRb-Independent Manner
Su-Jung Kim, Chrystelle Maric, Lina-Marie Briu, Fabien Fauchereau, Giuseppe Baldacci, Michelle Debatisse, Stéphane Koundrioukoff, Jean-Charles Cadoret
IJMS Volume 24 Issue 13 10.3390/ijms241310629
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Dynamic de novo heterochromatin assembly and disassembly at replication forks ensures fork stability
Vincent Gaggioli, Calvin S. Y. Lo, Nazaret Reverón-Gómez, Zuzana Jasencakova, Heura Domenech, Hong Nguyen, Simone Sidoli, Andrey Tvardovskiy, Sidrit Uruci, Johan A. Slotman, Yi Chai, João G. S. C. Souto Gonçalves, Eleni Maria Manolika, Ole N. Jensen, David Wheeler, Sriram Sridharan, Sanjiban Chakrabarty, Jeroen Demmers, Roland Kanaar, Anja Groth & Nitika Taneja
Nature Cell Biology volume 25, pages 1017–1032 (2023)
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Transient chromatin compaction in fork restart
Susan M. Gasser
Nature Cell Biology volume 25, pages 931–932 (2023)
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Interactions between Fkh1 monomers stabilize its binding to DNA replication origins
Allan Reinapae, Ivar Ilves, Henel Jürgens, Signe Värv, Kersti Kristjuhan, Arnold Kristjuhan
JBC VOLUME 299 105026, AUGUST 2023
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Replisome dysfunction upon inducible TIMELESS degradation synergizes with ATR inhibition to trigger replication catastrophe
Jinal A Patel, Camryn Zezelic, Julie Rageul, Joanne Saldanha, Arafat Khan, Hyungjin Kim
Nucleic Acids Research 51, Pages 6246–6263
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Actin nucleators safeguard replication forks by limiting nascent strand degradation
Jadwiga Nieminuszczy, Peter R Martin, Ronan Broderick, Joanna Krwawicz, Alexandra Kanellou, Camelia Mocanu, Vicky Bousgouni, Charlotte Smith, Kuo-Kuang Wen, Beth L Woodward, Chris Bakal, Fiona Shackley, Andrés Aguilera, Grant S Stewart, Yatin M Vyas, Wojciech Niedzwiedz
Nucleic Acids Research, Volume 51, Pages 6337–6354,
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Go along to get along: Integrator at active replication forks defuses co-directional transcription-replication conflicts
Leticia Dinatto,Peter C. Stirling
Mol Cell ISSUE 13, P2161-2163, JULY 06, 2023
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Integrator facilitates RNAPII removal to prevent transcription-replication collisions and genome instability
Rahul Bhowmick, Kavi P.M. Mehta, Mads Lerdrup, David Cortez
Mol Cell 83,P2357-2366
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A look into the dynamic process of proofreading in DNA polymerase-γ at near-atomic resolution
Nature Structural & Molecular Biology volume 30, pages 722–723 (2023)
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Polγ coordinates DNA synthesis and proofreading to ensure mitochondrial genome integrity
Joon Park, Geoffrey K. Herrmann, Patrick G. Mitchell, Michael B. Sherman & Y. Whitney Yin
Nature Structural & Molecular Biology volume 30, pages 812–823 (2023)
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H4S47 O-GlcNAcylation regulates the activation of mammalian replication origins
Yingying Zou, Jiayao Pei, Haizhen Long, Liting Lan, Kejian Dong, Tingting Wang, Ming Li, Zhexuan Zhao, Lirun Zhu, Gangxuan Zhang, Xin Jin, Yang Wang, Zengqi Wen, Min Wei & Yunpeng Feng
Nature Structural & Molecular Biology volume 30, pages 800–811 (2023)
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Distinct Interaction Modes for the Eukaryotic RNA Polymerase Alpha-like Subunits
Alana E. Belkevich, Haleigh G. Pascual, Aula M. Fakhouri, David G. Ball & Bruce A. Knutson
Mol Cell Biol 43 Pages 269-282
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DNA polymerase ε leading strand signature mutations result from defects in its proofreading activity
Robert E. Johnson, Louise Prakash, and Satya Prakash
JBC 299 104293 June 2023,
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Cell-type specificity of the human mutation landscape with respect to DNA replication dynamics
Madison Caballero, Dominik Boos, Amnon Koren
Mol Cell VOLUME 3, ISSUE 6, 100315
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Structures of human primosome elongation complexes
Qixiang He, Andrey G. Baranovskiy, Lucia M. Morstadt, Alisa E. Lisova, Nigar D. Babayeva, Benjamin L. Lusk, Ci Ji Lim & Tahir H. Tahirov
Nature Structural & Molecular Biology volume 30, pages 579–583 (2023)
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Human primase hangs on the primer–template and Polα to facilitate primer termination.
He et al
Nat Struct Mol Biol 30, 575–576 (2023).
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CAF-1 deposits newly synthesized histones during DNA replication using distinct mechanisms on the leading and lagging strands
Clément Rouillon, Bruna V Eckhardt, Leonie Kollenstart, Fabian Gruss, Alexander E E Verkennis, Inge Rondeel, Peter H L Krijger, Giulia Ricci, Alva Biran, Theo van Laar, Charlotte M Delvaux de Fenffe, Georgiana Luppens, Pascal Albanese, Koichi Sato, Richard A Scheltema, Wouter de Laat, Puck Knipscheer, Nynke H Dekker, Anja Groth, Francesca Mattiroli
Nucleic Acids Research, Volume 51, Pages 3770–3792
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DNA polymerase POLD1 promotes proliferation and metastasis of bladder cancer by stabilizing MYC
Yejinpeng Wang, Lingao Ju, Gang Wang, Kaiyu Qian, Wan Jin, Mingxing Li, Jingtian Yu, Yiliang Shi, Yongzhi Wang, Yi Zhang, Yu Xiao & Xinghuan Wang
Nature Communications volume 14, Article number: 2421 (2023)
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Characterization of POLE c.1373A > T p.(Tyr458Phe), causing high cancer risk
Mariève J. Rocque, Vilde Leipart, Ashish Kumar Singh, Pilar Mur, Maren F. Olsen, Lars F. Engebretsen, Edgar Martin-Ramos, Rosa Aligué, Pål Sætrom, Laura Valle, Finn Drabløs, Marit Otterlei & Wenche Sjursen
MGG volume 298, pages 555–566 (2023)
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RAD51 bypasses the CMG helicase to promote replication fork reversal
WENPENG LIU, YUICHIRO SAITO, JESSICA JACKSON, RAHUL BHOWMICK, MASATO T. KANEMAKI, ALESSANDRO VINDIGNI, AND DAVID CORTEZ
SCIENCE 380 pp. 382-387
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Contributions of replicative and translesion DNA polymerases to mutagenic bypass of canonical and atypical UV photoproducts
Brittany N. Vandenberg, Marian F. Laughery, Cameron Cordero, Dalton Plummer, Debra Mitchell, Jordan Kreyenhagen, Fatimah Albaqshi, Alexander J. Brown, Piotr A. Mieczkowski, John J. Wyrick & Steven A. Roberts
Nature Communications volume 14, Article number: 2576 (2023)
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DNA Damage-Induced, S-Phase Specific Phosphorylation of Orc6 is Critical for the Maintenance of Genome Stability
Yo-Chuen Lin, Dazhen Liu, Arindam Chakraborty, Virgilia Macias, Eileen Brister, Jay Sonalkar, Linyuan Shen, Jaba Mitra, Taekjip Ha, Andre Kajdacsy-Balla, Kannanganattu V. Prasanth & Supriya G. Prasanth
Mol Cell Biol 43 Pages 143-156
26 April 2023
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The human pre-replication complex is an open complex
Jian Li,Jiangqing Dong,Weitao Wang,Daqi Yu,Xinyu Fan,Yan Chit Hui,Clare S.K. Lee,Wai Hei Lam,Nathan Alary,Yang Yang,Yingyi Zhang,Qian Zhao,Chun-Long Chen,Bik-Kwoon Tye,Shangyu Dang,Yuanliang Zhai
Cell VOLUME 186, ISSUE 1, P98-111.E21, JANUARY 05, 2023
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CDT1, a licensing factor that limits rereplication
Gergely Rona and Michele Pagano
Mol Cell VOLUME 83, ISSUE 1, P1-3, JANUARY 05, 2023
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Dephosphorylation of the pre-initiation complex is critical for origin firing
Fiona Jenkinson,Kang Wei Tan,Barbara Schöpf,Miguel M. Santos,Philip Zegerman
Mol Cell VOLUME 83, ISSUE 1, P12-25.E10, JANUARY 05, 2023
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CDT1 inhibits CMG helicase in early S phase to separate origin licensing from DNA synthesis
Nalin Ratnayeke,Yasemin Baris,Mingyu Chung,Joseph T.P. Yeeles,Tobias Meyer
Mol Cell VOLUME 83, ISSUE 1, P26-42.E13, JANUARY 05, 2023
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Replication fork uncoupling causes nascent strand degradation and fork reversal
Tamar Kavlashvili, Wenpeng Liu, Taha M. Mohamed, David Cortez & James M. Dewar
Nature Structural & Molecular Biology volume 30, pages 115–124 (2023)
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Balancing act of a leading strand DNA polymerase-specific domain and its exonuclease domain promotes genome-wide sister replication fork symmetry
Xiangzhou Meng, Clémence Claussin, Gemma Regan-Mochrie1, Iestyn Whitehouse and Xiaolan Zhao
Gnes and Dev January 26, 2023,
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Origins of DNA replication in eukaryotes
Yixin Hu and Bruce Stillman
Mol Cell VOLUME 83, ISSUE 3, P352-372, FEBRUARY 02, 2023
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Rapid profiling of DNA replication dynamics using mass spectrometry–based analysis of nascent DNA
Mohamed E. Ashour,Andrea K. Byrum ,Alice Meroni ,Jun Xia ,Saurabh Singh ,Roberto Galletto ,Susan M. Rosenberg ,Alessandro Vindigni ,Nima Mosammaparast
J Cell Biol (2023) 222 (4): e202207121.
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A replication fork determinant for the establishment of sister chromatid cohesion
Masashi Minamino,Céline Bouchoux,Berta Canal,John F.X. Diffley,Frank Uhlmann
Cell VOLUME 186, ISSUE 4, P837-849.E11,
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Detection and characterization of constitutive replication origins defined by DNA polymerase epsilon
Roman Jaksik, David A. Wheeler & Marek Kimmel
BMC Biology volume 21, Article number: 41 (2023)
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DNA replication initiation factor RECQ4 possesses a role in antagonizing DNA replication initiation
Xiaohua Xu, Chou-Wei Chang, Min Li, Kenneth Omabe, Nhung Le, Yi-Hsuan Chen, Feng Liang & Yilun Liu
Nature Communications volume 14, Article number: 1233 (2023)
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Distinct roles of Arabidopsis ORC1 proteins in DNA replication and heterochromatic H3K27me1 deposition
Zaida Vergara, María S. Gomez, Bénédicte Desvoyes, Joana Sequeira-Mendes, Kinda Masoud, Celina Costas, Sandra Noir, Elena Caro, Victoria Mora-Gil, Pascal Genschik & Crisanto Gutierrez
Nature Communications volume 14, Article number: 1270 (2023)
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The evolution of the human DNA replication timing program
Alexa N. Bracci, Anissa Dallmann, Qiliang Ding, Melissa J. Hubisz, Madison Caballero, and Amnon Koren
PNAS February 27, 2023 120 (10) e2213896120
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Mismatch repair operates at the replication fork in direct competition with mismatch extension by DNA polymerase δ
Roland Klassen,Venkat Gangavarapu,Robert E. Johnson,Louise Prakash, Satya Prakash
JBC VOLUME 299, ISSUE 4, 104598, APRIL 2023
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Direct visualization of transcription-replication conflicts reveals post-replicative DNA:RNA hybrids
Henriette Stoy, Katharina Zwicky, Danina Kuster, Kevin S Lang, Jana Krietsch, Magdalena P. Crossley, Jonas A. Schmid, Karlene A. Cimprich, Houra Merrikh & Massimo Lopes
Nature Structural & Molecular Biology volume 30, pages 348–359 (2023)
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The evolving tale of Pol2 function
Matthew Gallitto and Zhiguo Zhang
Genes and Dev April 1, 2023, 37 (7-8)
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Balancing act of a leading strand DNA polymerase-specific domain and its exonuclease domain promotes genome-wide sister replication fork symmetry
Xiangzhou Meng, Clémence Claussin, Gemma Regan-Mochrie, Iestyn Whitehouse and Xiaolan Zhao
Genes & Dev. 2023. 37: 74-79
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The importance of nuclear RAGE–Mcm2 axis in diabetes or cancer-associated replication stress
Zhe Han, Martin Andrš, Bindhu K Madhavan, Serap Kaymak, Alba Sulaj, Zoltan Kender, Stefan Kopf, Lars Kihm, Rainer Pepperkok, Pavel Janscak, Peter Nawroth, Varun Kumar
Nucleic Acids Research, Volume 51, Issue 5, 21 March 2023, Pages 2298–2318,
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ORChestra coordinates the replication and repair music
Dazhen Liu, Jay Sonalkar, Supriya G. Prasanth
Bioessays Volume45, Issue4 April 2023 2200229
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Replication timing and transcriptional control: beyond cause and effect — part IV
Athanasios E Vouzas , David M Gilbert
Current Opinion in Genetics & Development Volume 79, April 2023, 102031
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DDK promotes DNA replication initiation: Mechanistic and structural insights
Ningning Li, Ning Gao, Yuanliang Zhai
Current Opinion in Structural Biology Volume 78, February 2023, 102504
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Okazaki fragment maturation: DNA flap dynamics for cell proliferation and survival
Haitao Sun,Lingzi Ma,Ya-Fang Tsai,Tharindu Abeywardana,Binghui Shen, Li Zheng
Trends in Cell Biol VOLUME 33, ISSUE 3, P221-234, MARCH 2023
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The in vivo measurement of replication fork velocity and pausing by lag-time analysis
Dean Huang, Anna E. Johnson, Brandon S. Sim, Teresa W. Lo, Houra Merrikh & Paul A. Wiggins
Nature Communications volume 14, Article number: 1762 (2023)
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RNA:DNA hybrids from Okazaki fragments contribute to establish the Ku-mediated barrier to replication-fork degradation
Charlotte Audoynaud,Kamila Schirmeisen,Anissia Ait Saada,Armelle Gesnik,Paloma Fernández-Varela, Virginie Boucherit,Virginie Ropars,Anusha Chaudhuri,Karine Fréon,Jean-Baptiste Charbonnier,Sarah A.E. Lambert
Mol Cell VOLUME 83, ISSUE 7, P1061-1074.E6, APRIL 06, 2023
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GINS4 suppresses ferroptosis by antagonizing p53 acetylation with Snail
Ling Chen , Qidong Cai, Rui Yang, Haiyan Wang, Huli Ling, Tiansheng Li, Na Liu, Zuli Wang, Jingyue Sun, Tania Tao, Ying Shi, Ya Cao, Xiang Wang, Desheng Xiao, Shuang Liu, and Yongguang Tao
PNAS April 5, 2023 120 (15) e2219585120
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Replication licensing during S phase: breaking the law to prevent breaking DNA
David M. Gilbert
Nature Structural & Molecular Biology volume 30, pages 406–408 (2023)
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Mistimed origin licensing and activation stabilize common fragile sites under tight DNA-replication checkpoint activation
Olivier Brison, Stefano Gnan, Dana Azar, Stéphane Koundrioukoff, Rodrigo Melendez-Garcia, Su-Jung Kim, Mélanie Schmidt, Sami El-Hilali, Yan Jaszczyszyn, Anne-Marie Lachages, Claude Thermes, Chun-Long Chen & Michelle Debatisse
Nature Structural & Molecular Biology volume 30, pages 539–550 (2023)
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Nucleotide binding halts diffusion of the eukaryotic replicative helicase during activation
Daniel Ramírez Montero, Humberto Sánchez, Edo van Veen, Theo van Laar, Belén Solano, John F. X. Diffley & Nynke H. Dekker
Nature Communications volume 14, Article number: 2082 (2023)
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Bromodomain protein BRD8 regulates cell cycle progression in colorectal cancer cells through a TIP60-independent regulation of the pre-RC complex
Kiyoshi Yamaguchi, Saya Nakagawa,Akari Saku,Yumiko Isobe,Rui Yamaguchi,Paul Sheridan,Kiyoko Takane,Tsuneo Ikenoue,Chi Zhu,Masashi Miura,Yuya Okawara,Satoru Nagatoishi,Hiroko Kozuka-Hata,Masaaki Oyama,Susumu Aikou,Yuka Ahiko,Dai Shida,Kouhei Tsumoto,Satoru Miyano,Seiya Imoto,Yoichi Furukawa
iScience VOLUME 26, ISSUE 4,106563, APRIL 21, 2023
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